个人简历

1991-1995，南京农业大学，本科\r
1995-1998，原浙江农业大学，硕士\r
1998-2001，浙江大学，博士\r
2001-2004，美国俄亥俄州立大学，博士后\r
2004-2006 ，美国冷泉港实验室，博士后\r
2006-2010，北京生命科学研究所，研究员\r
2010-2011，北京生命科学研究所，高级研究员\r
2011-现在，清华大学生命科学学院，教授

研究领域

"植物小RNA与长非编码RNA的生物学功能和作用机制、植物表观遗传的作用机制。"

近期论文

Jiang, P. #, Lian, B. #, Liu, C., Fu, Z., Shen, Y., Chen, Z.* and Qi, Y.* (2020) 21-nt phasiRNAs direct target mRNA cleavage in rice male germ cells. Nature Communications, 11: 5191\r
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Xie, D.#, Chen, M.#, Niu, J.#, Wang, L., Li, Y., Fang, X., Li, P. and Qi, Y.* (2020) Phase separation of Serrate drives dicing body assembly and promotes miRNA processing in Arabidopsis. Nature Cell Biology, 23: 32-39\r
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Xu, L., Yuan, K., Yuan, M., Meng, X., Chen, M., Li, J.* and Qi, Y.* (2020) Regulation of rice tillering by RNA-directed DNA methylation at miniature inverted-repeat transposable elements. Molecular Plant, 13: 851-863\r
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Song, X.#, Li, Y.#, Cao, X.* and Qi, Y.* (2019) MicroRNAs and their regulatory roles in plant-environment interaction. Annual Review in Plant Biology, 70: 489-525\r
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Fang, X.#, Zhao, G.#, Zhang S., Li, Y., Gu, H., Li, Y., Zhao, Q. and Qi, Y.* (2019) Chloroplast-to-nucleus signaling regulates microRNA biogenesis in Arabidopsis. Developmental Cell, 48: 371-382\r
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Zhao, X.#, Li, J.#, Lian, B.#, Gu, H., Li, Y.* and Qi, Y.* (2018) Global identification of Arabidopsis lncRNAs reveals the regulation of MAF4 by a natural antisense RNA. Nature Communications, 9: 5056\r
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Li, Y.#, Yuan, Y.#, Fang, X.#, Lu, X., Lian, B., Zhao, G., Qi, Y.* (2018) A role for MINIYO and QUATRE-QUART 2 in the assembly of RNA polymerases II, IV and V in Arabidopsis. The Plant Cell, 30: 466-480.\r
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Liu, C.#, Xin, Y.#, Xu, L.#, Cai, Z., Xue, Y., Liu, Liu, C., Xin, Y., Xu, L., Cai, Z., Xue, Y., Liu, Y., Xie, D., Liu, Y. and Qi, Y.* (2018) Arabidopsis ARGONAUTE1 binds chromatin to promote gene transcription in response to hormone and stress stimuli. Developmental Cell, 44 (3): 348-361. Highlighted in Developmental Cell 44: 277-279, 2018\r
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Xu, L.#, Hu, Y.#, Cao, Y., Li, J., Ma, L., Li, Y.* and Qi Y.* (2018) An expression atlas of miRNAs in Arabidopsis thaliana. Science China Life Sciences, 61: 178-189.\r
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Liu, M., Ba, Z., Costa-Nunes, P., Wei, W., Li, L., Kong, F., Li, Y., Chai, J., Pontes, O. and Qi, Y.* (2017) IDN2 interacts with RPA and facilitates DNA double-strand break repair by homologous recombination in Arabidopsis. The Plant Cell, 29: 589-599.\r
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Cui, Y.#, Fang, X.# and Qi, Y.* (2016) TRANSPORTIN1 Promotes the Association of MicroRNA with ARGONAUTE1 in Arabidopsis. The Plant Cell, 28: 2576-2585.\r
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Fang, X. and Qi, Y.* (2016) RNAi in plants: An Argonaute-centered view. The Plant Cell, 28: 272-285. (invited review)\r
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Ye, R. #, Chen, Z. #, Lian, B., Rowley, M., Xia, N., Chai, J., Li, Y., Wierzbicki A., and Qi, Y.* (2016) A Dicer-independent route for biogenesis of siRNAs that direct DNA methylation in Arabidopsis. Molecular Cell, 61: 222-235.\r
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Fang, X., Cui, Y., Li, Y., and Qi, Y.* (2015) Transcription and processing of primary miRNAs are coupled by Elongator complex in Arabidopsis. Nature Plants, doi:10.1038/nplants.2015.75.\r
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Fang, X., Lu, X., Chen, Z., and Qi, Y.* (2015) CMA33/XCT regulates small RNA production through modulating the transcription of Dicer-Like genes in Arabidopsis. Molecular Plant, 8:1227-1236.\r
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Yang, Y.* and Qi, Y.* (2015) RNA-directed repair of DNA double-strand breaks. DNA Repair, 32:82-85.\r
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Wu, J., Yang, Z., Wang, Y., Zheng, L., Ye, R., Ji, Y., Zhao, S., Ji, S., Liu, R., Xu, L., Zheng, H., Zhou, Y., Zhang, X., Cao, X., Xie, L., Wu, Z. *, Qi, Y.*, and Li, Y.* (2015) Viral-Inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA. eLife, 10.7554/eLife.05733.\r
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Gao, M. #, Wei, W. #, Li, M. #, Wu, Y., Ba, Z., Jin K.-X., Li, M.-M., Liao, Y.-Q., Adhikari S., Chong, Z., Zhang, T., Guo, C.-X., Tang, T.-S., Zhu, B.-T., Xu, X.-Z., Mailand, N., Yang, Y.*, Qi, Y.*, and Rendtlew Danielsen, J. (2014) Ago2 Facilitates Rad51 recruitment and DNA double-strand break repair by homologous recombination. Cell Research，24:532-541.\r
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Wu, X., Shi, Y., Li, J., Xu, L., Fang, Y., Li, X., and Qi, Y.* (2013). A role for the RNA-binding protein MOS2 in microRNA maturation in Arabidopsis. Cell Research，23: 645-657.\r
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Ye, R. #, Wang, W. #, Iki, T., Liu, C., Wu, Y., Ishikawa M., Zhou, X., and Qi, Y.* (2012). Cytoplasmic assembly and selective nuclear import of Arabidopsis ARGONAUTE4/siRNA complexes. Molecular Cell, 46: 859-870. Highlighted in Molecular Cell 46: 719-721, 2012\r
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Wei, W. #, Ba, Z. #, Gao, M., Wu, Y., Ma, Y., Amiard, S., White, C., Danielsen, J., Yang, Y., and Qi, Y.* (2012). A role for small RNAs in DNA double-strand break repair. Cell, 149:101-112. Highlighted in Nature Review Genetics 13:299, 2012; Nature Reviews Molecular Cell Biology 13: 282, 2012; and Nature Structural & Molecular Biology 19: 470, 2012 Recommended on Faculty of 1000 ( http://f1000.com/prime/14263986)\r
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Wang, W. #, Ye, R. #, Xin, Y., Feng, X., Li, C., Zhou, X., and Qi, Y.* (2011). An Importin β protein negatively regulates microRNA activity in Arabidopsis. The Plant Cell, 23: 3565-3576. (Cover story)\r
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Wu, L. #, Zhou, H. #, Zhang, Q., Ni, F., Liu, C., and Qi, Y.* (2010). DNA methylation mediated by a microRNA pathway. Molecular Cell, 38: 465-475. (Cover story) Highlighted in Cell, 141: 556, 2010.\r
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Wu, L., Zhang, Q., Zhou, H., Ni, F., Wu, X., and Qi, Y.* (2009). Rice microRNA effector complexes and targets. The Plant Cell, 21: 3421-3435.\r
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Mi, S. #, Cai, T. #, Hu Y., Chen Y., Hodges E., Ni F., Wu L., Li S., Zhou H., Long C., Chen S., Hannon G., and Qi, Y.* (2008) Sorting of small RNAs into Arabidopsis Argonaute complexes is directed by the 5’ terminal nucleotide. Cell, 133: 116-127. This work was featured in Cell 133:25-26, 2008.\r
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Zhao, T. #, Li, G. #, Mi, S., Li, S., Hannon, G., Wang, X.-J.*, and Qi, Y*. (2007). A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes and Development, 29: 1190-1203. (*co-corresponding authors) Highlighted in: Cell 129:1029, 2007; Genes and Development 21: 1153-1156, 2007; Nature 447: 5, 2007; Nature 447: 518, 2007; Nature Review Genetics 8: 406, 2007; ACS Chemical Biology 2: 436-437, 2007