个人简历

1993-1997 清华大学生物科学与技术系 学士 \r
1997-2000 清华大学生物科学与技术系 硕士\r
2000-2006 约翰霍普金斯大学分子生物物理学 博士\r
2006-2007 约翰霍普金斯大学分子生物物理学 博士后\r
2007-2009 芝加哥大学生物化学和分子生物学 博士后\r
2009-2014 清华大学生命学院 助理教授\r
2015-至今 清华大学生命学院 副教授

研究领域

"发展计算机算法根据氨基酸序列预测蛋白质三维结构\r
发展分子动力学模拟的新方法用于定量分析生物大分子的大尺度构象变化"

近期论文

BERT-Kcr: prediction of lysine crotonylation sites by a transfer learning method with pre-trained BERT models Yanhua Qiao, Xiaolei Zhu, Haipeng Gong\r
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Exploring the Regulatory Function of the N-terminal Domain of SARS-CoV-2 Spike Protein through Molecular Dynamics Simulation Yao Li, Tong Wang, Juanrong Zhang, Bin Shao, Haipeng Gong, Yusong Wang, Xinheng He, Siyuan Liu, Tie-Yan Liu\r
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Predicting the Real-Valued Inter-Residue Distances for Proteins Wenze Ding, Haipeng Gong\r
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Frontier Expansion Sampling: A Method to Accelerate Conformational Search by Identifying Novel Seed Structures for Restart Juanrong Zhang, Haipeng Gong\r
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RDb2C2: an improved method to identify the residue-residue pairing in β strands Di Shao, Wenzhi Mao, Yaoguang Xing, Haipeng Gong\r
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AmoebaContact and GDFold as a pipeline for rapid de novo protein structure prediction Wenzhi Mao, Wenze Ding, Yaoguang Xing, Haipeng Gong\r
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Improved fragment sampling for ab initio protein structure prediction using deep neural networks Tong Wang, Yanhua Qiao, Wenze Ding, Wenzhi Mao, Yaoqi Zhou, Haipeng Gong\r
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DeepConPred2: An Improved Method for the Prediction of Protein Residue Contacts Wenze Ding, Wenzhi Mao, Di Shao, Wenxuan Zhang, Haipeng Gong\r
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Identification of residue pairing in interacting β-strands from a predicted residue contact map Wenzhi Mao, Tong Wang, Wenxuan Zhang, Haipeng Gong\r
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Mechanism of actions of Oncocin, a proline-rich antimicrobial peptide, in early elongation revealed by single-molecule FRET Sijia Peng, Mengyi Yang, Rui Ning Sun, Yang Liu, Wenjuan Wang, Qiaoran Xi, Haipeng Gong, Chunlai Chen\r
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Molecular determinants for the thermodynamic and functional divergence of uniporter GLUT1 and proton symporter XylE Meng Ke, Yafei Yuan, Xin Jiang, Nieng Yan, Haipeng Gong\r
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A deep learning framework for improving long-range residue-residue contact prediction using a hierarchical strategy Dapeng Xiong, Jianyang Zeng, Haipeng Gong\r
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Simulating the Activation of Voltage Sensing Domain for a Voltage-Gated Sodium Channel Using Polarizable Force Field Rui-Ning Sun, Haipeng Gong\r
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LRFragLib: an effective algorithm to identify fragments for de novo protein structure prediction Tong Wang, Yuedong Yang, Yaoqi Zhou, Haipeng Gong\r
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Impairment on the lateral mobility induced by structural changes underlies the functional deficiency of the lupus-associated polymorphism FcγRIIB-T232 Liling Xu, Mengdie Xia, Jun Guo, Xiaolin Sun, Hua Li, Chenguang Xu, Xiaomei Gu, Haowen Zhang, Junyang Yi, Yan Fang, Hengyi Xie, Jing Wang, Zhixun Shen, Boxin Xue, Yujie Sun, Tobias Meckel, Ying-Hua Chen, Zhibin Hu, Zhanguo Li, Chenqi Xu, Haipeng Gong, Wanli Liu\r
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Protonation of Glu135 Facilitates the Outward-to-Inward Structural Transition of Fucose Transporter Yufeng Liu, Meng Ke, Haipeng Gong