个人简历
教育经历 学士 1995-09-01 2000-07-01 国防科学技术大学 电子工程 硕士 2004-09-01 2007-07-01 上海大学 生物化学与分子生物学 博士 2007-09-01 2010-07-01 南开大学 生物信息学 工作经历 解放军总参四部 2000-07-01 2004-09-01 助理工程师 美国堪萨斯大学 2010-07-01 2011-08-01 博士后 美国康奈尔大学 2011-08-01 2014-08-01 博士后 南开大学 2014-08-01 今 副教授
研究领域
High throughout omics data analysis based on the 2nd or 3rd sequencing technology, including genomics data, RNA-seq or small RNA-seq data. Long non-coding RNAs and data analysis in single-Cell transcriptome sequencing Bioinformatics in cancer, viruses or other related fields.
近期论文
Zhenfeng Wu, Weixiang Liu, Xiufeng Jin, Haishuo Ji, Hua Wang, Gustavo Glusman, Max Robinson, Lin Liu, Jishou Ruan, Shan Gao*. NormExpression: an R package to normalize gene expression data using evaluated methods. Frontiers in Genetics 2019, In revision. (2区，IF= 4.151) Haishuo Ji, Xiaofeng Xu, Xiufeng Jin, Hong Yin, Jianxun Luo, Guangyuan Liu, Qiang Zhao, Ze Chen, Wenjun Bu, Shan Gao*. Using high-resolution annotation of insect mitochondrial DNA to decipher tandem repeats in the control region. RNA biology 2019: https://doi.org/10.1080/15476286.2019.1591035. (2区，IF= 5.216) Xiaofeng Xu, Haishuo Ji, Zhi Cheng, Xiufeng Jin, Xue Yao, Yanqiang Liu, Qiang Zhao, Tao Zhang, Jishou Ruan, Wenjun Bu, Ze Chen and Shan Gao*. Using pan RNA-seq analysis to reveal the ubiquitous existence of 5' and 3' end small RNAs. Frontiers in Genetics 2019: https://doi.org/10.3389/fgene.2019.00105. (2区，IF= 4.151) Ze. Chen, Xiaofeng Xu, Yufeng Wang, Jinlong Bei, Xiufeng Jin, Weihao Dou, Haishuo Ji, Yujie Duan, Xiaojun Yang and Shan Gao*. DNA segments of African Swine Fever Virus detected for the first time in hard ticks from sheep and bovines. Systematic & Applied Acarology, 2019, 24(1): 180-184. (4区，IF= 1.696) Chang Liu, Ze Chen, Yue Hu, Haishuo Ji, Deshui Yu, Wenyuan Shen, Siyu Li, Jishou Ruan, Wenjun Bu and Shan Gao*. Complemented Palindromic Small RNAs First Discovered from SARS Coronavirus. Genes 2018, 9(9):442. (3区，IF= 3.191) Zhi Cheng, Yu Sun, Xiaoran Niu, Yingchun Shang, Jishou Ruan, Ze Chen, Shan Gao* and Tao Zhang. Gene expression profiling reveals U1 snRNA regulates cancer gene expression. Oncotarget 2017, 8(68):112867-112874. (1区，IF= 5.168) Zhi Cheng, Yingchun Shang, Shan Gao, Tao Zhang. Overexpression of U1 snRNA induces decrease of U1 spliceosome function associated with Alzheimer’s disease. Journal of neurogenetics 2017:1 (4区，IF= 2.291) Shan Gao#, Xiaoxuan Tian, Hong Chang, Yu Sun, Zhenfeng Wu, Zhi Cheng, Pengzhi Dong, Qiang Zhao, Jishou Ruan, and Wenjun Bu. Two novel lncRNAs discovered in human mitochondrial DNA using PacBio full-length transcriptome data. Mitochondrion 2017, 38:41-47. (2区，IF= 3.704) Xiaoran Niu, Yu Sun, Ze Chen, Rugang Li, Chellappan Padmanabhan, Jishou Ruan, Jan F. Kreuze, Kaishu Ling, Zhangjun Fei and Shan Gao*. Using Small RNA-seq Data to Detect siRNA Duplexes Induced by Plant Viruses. Genes 2017, 8(6):163. (3区，IF= 3.6) Ze Chen, Yu Sun, Xiaojun Yang, Zhenfeng Wu, Kaifei Guo, Xiaoran Niu, Qingsong Wang, Jishou Ruan, Wenjun Bu, Shan Gao*. Two featured series of rRNA-derived RNA fragments (rRFs) constitute a novel class of small RNAs. PLoS ONE 2017, 12(4):e0176458. (3区，IF= 2.806) Yi Zheng, Shan Gao#, Chellappan Padmanabhan, Rugang Li, Marco Galvez, Dina Gutierrez, Segundo Fuentes, Kai-Shu Ling, Jan Kreuze, Zhangjun Fei. VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs. Virology 2016, 500(2017):130-138. (3区，IF= 3.353) Fantao Zhang, Tao Xu, Linyong Mao, Shuangyong Yan, Xiwen Chen, Zhenfeng Wu, Rui Chen, Xiangdong Luo, Jiankun Xie, Shan Gao*. Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication. BMC Plant Biology 2016, 16(1):103. (2区，IF= 3.631) Shan Gao#, Yipeng Ren, Yu Sun, Zhenfeng Wu, Jishou Ruan, Bingjun He, Tao Zhang, Xin Yu, Xiaoxuan Tian, Wenjun Bu. PacBio Full-length transcriptome profiling of insect mitochondrial gene expression. RNA biology 2016, 13(9): 820-825. (2区，IF= 4.076) Yanlong Wang, Bin Hu, Shipeng Du, Shan Gao, Xiwen Chen, Defu Chen. Proteomic Analyses Reveal the Mechanism of Dunaliella salina Ds-26-16 Gene Enhancing Salt Tolerance in Escherichia coli. PLoS ONE 2016, 11(5):e0153640. (3区，IF= 3.057) Qinghe Cao, Ang Li, Jinyang Chen, Yu Sun, Jun Tang, An Zhang, Zhilin Zhou, Donglan Zhao, Daifu Ma, Shan Gao*. Transcriptome sequencing of the sweet potato progenitor (Ipomoea trifida (H.B.K.) G. Don.) and discovery of drought tolerance genes. Tropical Plant Biology 2016, 9(2):63-72. (4区，IF= 0.562) Fang Wang, Yu Sun, Jishou Ruan, Rui Chen, Xin Chen, Chengjie Chen, Jan F. Kreuze, ZhangJun Fei, Xiao Zhu, Shan Gao*. Using small RNA deep sequencing data to detect human viruses. BioMed Research International 2016, 2016 (2016):2596782. (4区，IF= 2.134) Yuanzhi Wang, Zhen Wang, Xin Chen, Hui Zhang, Fei Guo, Ke Zhang, Hanping Feng, Wenyi Gu, Changxin Wu, Lei Ma, Tiansen Li, Chuangfu Chen, Shan Gao*. The Complete Genome of Brucella Suis 019 Provides Insights on Cross-Species Infection. Genes 2016, 7(2):7. (4区，IF= 2.165) Dangwei Zhou, Shan Gao#, Huan Wang, Tianxiang Lei, Jianwei Shen, Jie Gao, Shilong Chen, Jia Yin, Jianquan Liu. De novo sequencing transcriptome of endemic Gentiana straminea (Gentianaceae) to identify genes involved in the biosynthesis of active ingredients. Gene 2016, 575(1):160-170. (4区，IF= 2.319)
